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Hargreaves KR, Anderson NJ, Clokie MRJ. Recovery of viable cyanophages from the sediments of a eutrophic lake at decadal timescales. FEMS Microbiol Ecol 2012:DOI:10.1111/1574-6941.1200

Shan J, Patel KV, Hickenbotham PT, Nale JY, Hargreaves KR, Clokie MRJ. Prophage carriage and diversity within clinically relevant strains of Clostridium difficile. Applied and Environmental Microbiology 2012;78:6027-34

Nale JY, Shan J, Hickenbotham PT, Fawley WN, Wilcox MH, Clokie MRJ. Diverse temperate bacteriophage carriage in Clostridium difficile 027 strains. PLoS ONE 2012;7:DOI.10.1371/journal.pone.0037263

Ray JL, Dondrup M, Mohda S, Steen IH, Saanda RA, Clokie MRJ. Finding the needle in the metagenomic viral haystack - micro-metagenome analysis captures a snapshot of the evolution of a bacteriophage armoire. PLoS ONE 2012;7:DOI.10.1371/journal.pone.0034238


Gatedee J, Kritsiriwuthinan K, Galyov E,  Shan J, Dubinina E, Intarak N, Clokie MRJ, Korbsrisate S. Isolation and characterization of a novel podovirus which infects Burkholderia pseudomallei. Virology Journal 2011;8:DOI: 10.1186/1743-422X-8-366  

Chan Y-W, Mohr R, Millard AD, Holmes AB, Larkum AW, Whitworth AL, Mann NH, Scanlan DJ, Hess WR, Clokie MRJ. Discovery of cyanophage genomes which contain mitochondrial DNA polymerase. Molecular Biology and Evolution 2011;8:2269-74  


Clokie MRJ, Millard AD, Mann NH. T4 genes in the marine ecosystem: Studies of theT4 like cyanophages and their role in marine ecology. Virology Journal 2010;7:291

Jia Y, Shan J, Millard AD, Clokie MRJ, Mann NH. Light-dependent adsorption of photosynthetic cyanophages to Synechococcus sp. WH7803.  FEMS Microbiology Letters 2010;310:120-6

Millard AD, Gierga G, Clokie MRJ, Evans DJ, Hess WR, Scanlan DJ. An antisense RNA in a lytic cyanophage links psbA to a gene encoding a homing endonuclease. The ISME Journal 2010;1–15


Alleyne SA, Hussain AM, Clokie M, Jenkins DR. Stethoscopes: potential vectors of Clostridium difficile. J Hosp Infect 2009;73:187-9

Clokie MR. Quantification of host and phage mRNA expression during infection using real-time PCR. Methods Mol Biol 2009;502:177-91

Clokie M. PCR and partial sequencing of bacteriophage genomes. Methods Mol Biol 2009;502:47-55


Clokie MRJ. Microbes and oxygen. Microbiology Today 2008;35:116-19

Clokie MRJ, Thalassinos K, Boulanger P, Slade S, Scrivens J, Mann NH.  A proteomic approach to an analysis of the virion structure of the marine bacteriophage S-PM2. Microbiology 2008;154:1775-82

Shan J, Jia Y, Clokie MRJ, Mann NH. Infection by the 'photosynthetic' phage S-PM2 induces increased synthesis of phycoerythrin in Synechococcus sp WH7803. FEMS Microbiol Lett 2008;283:154-61

Bryan MJ, Burroughs NJ, Spence EM, Clokie MRJ, Mann NH, Bryan S. Evidence for the intense exchange of MazG in marine cyanophages by horizontal gene transfer. PLoS ONE 2008;3:e2048

Sandaa R-A, Clokie MRJ, Mann NH. Photosynthetic genes in viral populations with a large genomic size range from Norwegian coastal waters. FEMS Microbiol Ecol 2008;63:2-11


Chan Y-W, Nenninger A, Clokie SJH, Mann NH, Scanlan DJ, Whitworth AL, Clokie MRJ.  Pigment composition and adaptation in free-living and symbiotic strains of Acaryochloris marina.  FEMS Microbiol Ecol 2007;61:65-73


Clokie MRJ, Mann NH. Cyanophages and light environmental microbiology. Environmental Microbiology 2006;8:2074–82

Clokie MRJ, Millard AD, Metha JY, Mann NH. Virus isolation studies suggest diel cycles in viral abundance in natural cyanophage population of the Indian Ocean. Journal of the Marine Biological Association of the United Kingdom 2006;86:499-505 

Clokie MR, Shan J, Bailey S, Jia Y, Krisch HM, West S, Mann NH. Transcription of a ‘photosynthetic’ T4-type phage during infection of a marine cyanobacterium. Environ Microbiol 2006;8:27-35

Mann NH, Clokie MRJ, Millard A, Cook A, Wilson W, Wheatley PJ, Letarov A, Krisch, HM. The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechoccus strains. J Bacteriol 2005;187:3188-200

Millard A, Clokie MRJ, Shub DA, Mann NH. Genetic organization of the psbAD region in phages infecting marine Synechococcus strains. Proc Natl Acad Sci USA 2004;101:11007-12

Bailey S, Clokie MRJ, Millard M, Mann NH. Cyanophage infection and photoinhibition in marine cyanobacteria. Res Microbiol 2004;155:720-5

Mann NH, Cook A, Millard A, Bailey S, Clokie M. Bacterial photosynthesis genes in a virus. Nature 2003;424:741

Clokie MRJ, Millard AD, Wilson WH, Mann NH. Encapsidation of host DNA by bacteriophages infecting marine Synechococcus strains. FEMS Microbiol Ecol 2003;46(3):349-52


Clokie MRJ and Kropinski A. (2009) (eds). Bacteriophages: Methods and Protocols: Volume 1: Isolation, Characterization and Interactions. Humana Press 

Clokie MRJ and Kropinski A. (2009) (eds). Bacteriophages: Methods and Protocols: Volume 2: Molecular and Applied Aspects. Humana Press 

Shan J and Clokie MRJ (2009). Preparation of RNA from Bacteria infected with Bacteriophages. Methods and Protocols. Volume 2: Molecular and Applied Aspects. Humana Press. 171–176

Clokie MRJ (2009). PCR and sequencing of phage DNA. In: Clokie and Kropinski (eds.) Bacteriophages: Methods and Protocols. Volume 2: Molecular and Applied Aspects. Humana Press. 177–192

Clokie MRJ (2009). Quantification of mRNA expression during infection using real time PCR. PCR and sequencing of phage DNA. In: Clokie and Kropinski (eds.) Bacteriophages: Methods and Protocols. Humana Press

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