Publications on Pubmed

Selected Publications

• Faas, F. G. A., B. Rieger, L. J. van Vliet, and D. I. Cherny. 2009. DNA deformations near charged surfaces: electron and atomic force microscopy views. Biophysical  J. 97:1148-1157

• Cherny, D. I., I. C. Eperon, and C. R. Bagshaw. 2009. Probing complexes with single fluorophores: factors contributing to dispersion of FRET. Eur. Biophys. J. 38:395-405.

• Bagshaw, C. R., and D. I. Cherny. 2006. Blinking fluorophores: what do they tell us about protein dynamics? Biochem. Soc. Trans. 34:979-982.

• Demirel, M. C., and D. Cherny. 2005. Clustering and diversity of fluctuations for proteins. Nanomedicine: Nanotechnology, Biology, and Medicine 1:41-46.

• Cherny, D. I., M. Brazdova, J. Palecek, E. Palecek, and T. M. Jovin. 2005. Sequestering of p53 into DNA-protein filaments revealed by electron microscopy. Biophys. Chem. 114:261-271.

• Bentin, T., D. Cherny, H. J. Larsen, and P. E. Nielsen. 2005. Transcription arrest caused by long nascent RNA chains. Biochim. Biophys. Acta 1727:97-105.

• Kuhn, H., D. I. Cherny, V. V. Demidov, and M. D. Frank-Kamenetskii. 2004. Inducing and modulating anisotropic DNA bends by pseudocomplementary peptide nucleic acids. Proc. Natl. Acad. Sci. USA. 101:7548-7553.

• Hoyer, W., D. Cherny, V. Subramaniam, and T. M. Jovin. 2004. Impact of the acidic C-terminal region comprising amino acids 109-140 on alpha-synuclein aggregation in vitro. Biochemistry 43:16233-16242.

• Cherny, D., W. Hoyer, V. Subramaniam, and T. M. Jovin. 2004. Double-stranded DNA stimulates the fibrillation of alpha-synuclein in vitro and is associated with the mature fibrils: an electron microscopy study. J. Mol. Biol. 344:929-938.

• Hoyer, W., T. Antony, D. Cherny, G. Heim, T. M. Jovin, and V. Subramaniam. 2002. Dependence of alpha-synuclein aggregate morphology on solution conditions. J. Mol. Biol. 322:383-393.

• Jiao, Y., D. I. Cherny, G. Heim, T. M. Jovin, and T. E. Schaffer. 2001. Dynamic interactions of p53 with DNA in solution by time-lapse atomic force microscopy. J. Mol. Biol. 314:233-243.

• Cherny, D. I., and T. M. Jovin. 2001. Electron and scanning force microscopy studies of alterations in supercoiled DNA tertiary structure. J. Mol. Biol. 313:295-307.

• Cognet, J. A., C. Pakleza, D. Cherny, E. Delain, and E. L. Cam. 1999. Static curvature and flexibility measurements of DNA with microscopy. A simple renormalization method, its assessment by experiment and simulation. J. Mol. Biol. 285:997-1009.

• Cherny, D. I., G. Striker, V. Subramaniam, S. D. Jett, E. Palecek, and T. M. Jovin. 1999. DNA bending due to specific p53 and p53 core domain-DNA interactions visualized by electron microscopy. J. Mol. Biol. 294:1015-1026.

• Cherny, D. I., A. Fourcade, F. Svinarchuk, P. E. Nielsen, C. Malvy, and E. Delain. 1998. Analysis of various sequence-specific triplexes by electron and atomic force microscopies. Biophys. J. 74:1015-1023.

• Cherny, D. I., V. A. Malkov, A. A. Volodin, and M. D. Frank-Kamenetskii. 1993. Electron microscopy visualization of oligonucleotide binding to duplex DNA via triplex formation. J. Mol. Biol. 230:379-383.

• Cherny, D. I., B. P. Belotserkovskii, M. D. Frank-Kamenetskii, M. Egholm, O. Buchardt, R. H. Berg, and P. E. Nielsen. 1993. DNA unwinding upon strand-displacement binding of a thymine-substituted polyamide to double-stranded DNA. Proc. Natl. Acad. Sci. USA. 90:1667-1670.